DPCstruct Metaclusters

⬡ Domain Classification in Structural Space
Properties CATH SCOP

The DPCstruct pipeline applied the Density Peak Clustering (DPC) algorithm to roughly 15 million representative AlphaFold2- predicted structures from the Foldseek Cluster database (a representative set of the AlphaFold Database, AlphaFoldDB v4.0), producing 28,246 structural metaclusters without any manual annotation. Because protein structure is more conserved than sequence over evolutionary time, DPCstruct recovers remote homologs, including proteins sharing a common fold at less than 30% sequence identity, that purely sequence-based methods typically miss.

Use the toggle buttons to switch between the Properties view (intrinsic structural metrics and Pfam annotations), the CATH fold annotations, or the SCOP fold annotations. Click any MCID to open its detail page, where you can explore the sequences and launch the integrated PDBe-Mol* 3D viewer.

CATH Fold MCID DPC Target Q.Range T.Range Q.Cov T.Cov Q.TM-Score T.TM-Score A.TM-Score lDDT pIdent
1.10.1380 MC22580 A0A834AFZ1_22580 1-342 60-394 0.91 0.83 0.85 0.79 0.79 0.82 46.4
2.40.350 MC2256 A0A1B8CGD1_2256 5-109 3-97 0.88 0.98 0.46 0.54 0.54 0.45 14.5
3.30.1820 MC22529 A0A0B6FQB7_22529 14-108 5-93 0.86 0.41 0.52 0.3 0.3 0.54 10.7
4.10.51 MC22270 A0A3Q0QYL8_22270 1-49 26-74 1.0 0.64 0.98 0.64 0.64 1.0 59.1
6.20.430 MC22265 A0A4U1ETI9_22265 1-37 19-55 0.97 0.24 0.95 0.24 0.24 0.97 100.0
3.40.1670 MC22205 F3BZU7_22205 1-118 26-143 1.0 0.71 1.0 0.71 0.71 1.0 92.3
3.40.1780 MC22167 A0A423Q2Q4_22167 2-204 5-340 1.0 0.99 0.94 0.57 0.57 0.88 30.5
2.170.240 MC22152 A0A5B7FD54_22152 20-225 2-207 0.92 1.0 0.91 0.99 0.99 0.92 68.9
1.10.940 MC22104 A0A7R8VTP6_22104 2-125 1-124 0.88 0.99 0.87 0.98 0.98 0.92 74.1
3.30.2330 MC221 F0XJ60_221 1-76 205-271 0.96 0.2 0.56 0.17 0.17 0.55 19.4
Legend
  • Agreement between CATH Folds and DPCstruct Metacluster Domains:
  • CATH Fold: CATH fold identifier.
  • MCID: DPCstruct metacluster identifier.
  • DPC Target: Target DPCstruct protein domain.
  • Q./T.Range: Amino acid coordinate ranges for query and target.
  • Q./T.Cov: Coverage metrics indicating how much of each domain was covered in the alignment.
  • A.TM-Score: Template Modeling score of the structural alignment (0-1).
  • lDDT: Local Distance Difference Test score.
  • pIdent: Percent sequence identity between query and target.