DPCstruct Metaclusters

⬡ Domain Classification in Structural Space
Properties CATH SCOP

The DPCstruct pipeline applied the Density Peak Clustering (DPC) algorithm to roughly 15 million representative AlphaFold2- predicted structures from the Foldseek Cluster database (a representative set of the AlphaFold Database, AlphaFoldDB v4.0), producing 28,246 structural metaclusters without any manual annotation. Because protein structure is more conserved than sequence over evolutionary time, DPCstruct recovers remote homologs, including proteins sharing a common fold at less than 30% sequence identity, that purely sequence-based methods typically miss.

Use the toggle buttons to switch between the Properties view (intrinsic structural metrics and Pfam annotations), the CATH fold annotations, or the SCOP fold annotations. Click any MCID to open its detail page, where you can explore the sequences and launch the integrated PDBe-Mol* 3D viewer.

CATH Fold MCID DPC Target Q.Range T.Range Q.Cov T.Cov Q.TM-Score T.TM-Score A.TM-Score lDDT pIdent
1.10.3620 MC51025 A0A6C7I0E6_51025 5-89 1-94 0.8 1.0 0.61 0.69 0.69 0.59 44.6
3.30.2390 MC5094 A0A4R6ES94_5094 5-70 7-58 0.94 0.63 0.51 0.45 0.45 0.61 17.9
1.20.1320 MC50909 A0A1S3BZI7_50909 1-124 1-112 0.96 0.98 0.49 0.54 0.54 0.49 14.6
3.40.366 MC50758 A0A0K0ESV2_50758 8-312 2-308 0.93 0.99 0.92 0.97 0.97 0.86 46.9
1.10.140 MC50624 A0A376FG64_50624 1-101 2-102 0.97 0.9 0.95 0.89 0.89 0.95 94.0
3.20.90 MC50524 A0A078ALX2_50524 2-231 5-215 0.99 0.98 0.79 0.85 0.85 0.76 34.8
3.30.1240 MC5005 A0A174DEG7_5005 2-94 101-211 0.98 0.49 0.51 0.24 0.24 0.46 11.9
1.20.1340 MC5005 A0A504YKT2_5005 1-67 44-110 0.82 0.17 0.58 0.13 0.13 0.57 46.2
3.90.960 MC5005 A0A2X3IEH6_5005 1-168 1-197 1.0 0.96 0.2 0.18 0.18 0.0 10.6
3.30.1020 MC5005 A0A835UU22_5005 5-69 247-317 0.93 0.22 0.43 0.15 0.15 0.54 14.0
Legend
  • Agreement between CATH Folds and DPCstruct Metacluster Domains:
  • CATH Fold: CATH fold identifier.
  • MCID: DPCstruct metacluster identifier.
  • DPC Target: Target DPCstruct protein domain.
  • Q./T.Range: Amino acid coordinate ranges for query and target.
  • Q./T.Cov: Coverage metrics indicating how much of each domain was covered in the alignment.
  • A.TM-Score: Template Modeling score of the structural alignment (0-1).
  • lDDT: Local Distance Difference Test score.
  • pIdent: Percent sequence identity between query and target.