DPCstruct Metaclusters

⬡ Domain Classification in Structural Space
Properties CATH SCOP

The DPCstruct pipeline applied the Density Peak Clustering (DPC) algorithm to roughly 15 million representative AlphaFold2- predicted structures from the Foldseek Cluster database (a representative set of the AlphaFold Database, AlphaFoldDB v4.0), producing 28,246 structural metaclusters without any manual annotation. Because protein structure is more conserved than sequence over evolutionary time, DPCstruct recovers remote homologs, including proteins sharing a common fold at less than 30% sequence identity, that purely sequence-based methods typically miss.

Use the toggle buttons to switch between the Properties view (intrinsic structural metrics and Pfam annotations), the CATH fold annotations, or the SCOP fold annotations. Click any MCID to open its detail page, where you can explore the sequences and launch the integrated PDBe-Mol* 3D viewer.

CATH Fold MCID DPC Target Q.Range T.Range Q.Cov T.Cov Q.TM-Score T.TM-Score A.TM-Score lDDT pIdent
1.10.1240 MC6845 A0A833QBR1_6845 16-107 1-94 0.8 0.98 0.56 0.64 0.64 0.57 6.3
3.30.2170 MC6827 A0A1A8VXE5_6827 34-224 1-229 0.85 1.0 0.3 0.29 0.29 0.0 10.3
3.40.1640 MC6819 A0A2S6QXM6_6819 6-137 2-251 0.96 1.0 0.91 0.51 0.51 0.87 28.5
3.30.2040 MC6819 A0A376GQ10_6819 2-106 104-215 0.99 0.46 0.96 0.43 0.43 0.94 60.7
2.60.210 MC6817 W5MHS1_6817 1-138 6-125 1.0 0.94 0.27 0.29 0.29 0.0 7.3
2.60.200 MC6817 A0A6J3H646_6817 1-112 4-115 1.0 0.95 0.99 0.94 0.94 0.97 100.0
2.60.320 MC6817 A0A1E4FHK3_6817 1-82 1-102 1.0 0.96 0.62 0.51 0.51 0.54 16.0
1.10.472 MC6817 A0A321LPH4_6817 7-100 102-174 0.86 0.41 0.28 0.19 0.19 0.51 11.7
2.60.120 MC6808 A9UW31_6808 4-166 268-420 0.98 0.35 0.85 0.33 0.33 0.81 27.1
1.10.3610 MC6804 Q176X9_6804 1-201 61-263 1.0 0.73 0.91 0.67 0.67 0.81 26.1
Legend
  • Agreement between CATH Folds and DPCstruct Metacluster Domains:
  • CATH Fold: CATH fold identifier.
  • MCID: DPCstruct metacluster identifier.
  • DPC Target: Target DPCstruct protein domain.
  • Q./T.Range: Amino acid coordinate ranges for query and target.
  • Q./T.Cov: Coverage metrics indicating how much of each domain was covered in the alignment.
  • A.TM-Score: Template Modeling score of the structural alignment (0-1).
  • lDDT: Local Distance Difference Test score.
  • pIdent: Percent sequence identity between query and target.