DPCstruct Metaclusters

⬡ Domain Classification in Structural Space
Properties CATH SCOP

The DPCstruct pipeline applied the Density Peak Clustering (DPC) algorithm to roughly 15 million representative AlphaFold2- predicted structures from the Foldseek Cluster database (a representative set of the AlphaFold Database, AlphaFoldDB v4.0), producing 28,246 structural metaclusters without any manual annotation. Because protein structure is more conserved than sequence over evolutionary time, DPCstruct recovers remote homologs, including proteins sharing a common fold at less than 30% sequence identity, that purely sequence-based methods typically miss.

Use the toggle buttons to switch between the Properties view (intrinsic structural metrics and Pfam annotations), the CATH fold annotations, or the SCOP fold annotations. Click any MCID to open its detail page, where you can explore the sequences and launch the integrated PDBe-Mol* 3D viewer.

CATH Fold MCID DPC Target Q.Range T.Range Q.Cov T.Cov Q.TM-Score T.TM-Score A.TM-Score lDDT pIdent
3.30.360 MC7885 A0A1C6FAK4_7885 1-67 75-145 0.98 0.49 0.86 0.43 0.43 0.83 32.3
6.20.200 MC7872 A0A2E4R9K5_7872 6-42 10-43 0.86 0.51 0.39 0.28 0.28 0.67 13.5
2.30.130 MC7868 A0A7S0WJX2_7868 1-74 15-145 0.9 0.47 0.82 0.25 0.25 0.79 16.0
3.10.590 MC7868 A0A7S0WJX2_7868 8-155 14-180 0.92 0.6 0.38 0.24 0.24 0.0 7.9
3.30.54 MC7866 I4ESF9_7866 1-43 77-130 0.92 0.29 0.46 0.16 0.16 0.52 14.8
1.20.1420 MC7863 A0A1X7GI23_7863 1-152 7-161 0.94 0.69 0.71 0.54 0.54 0.59 15.5
1.10.3260 MC7851 A0A7J5ZRK3_7851 1-196 8-210 0.99 0.94 0.98 0.9 0.9 0.96 75.8
3.30.470 MC7848 Q4STH3_7848 30-161 17-148 0.82 0.22 0.81 0.21 0.21 0.85 78.7
3.90.176 MC7844 A0A833RBD7_7844 5-205 260-429 0.98 0.29 0.15 0.07 0.07 0.0 8.9
1.10.1370 MC7844 A0A7R8WZ97_7844 1-371 109-635 0.99 0.83 0.96 0.57 0.57 0.91 39.4
Legend
  • Agreement between CATH Folds and DPCstruct Metacluster Domains:
  • CATH Fold: CATH fold identifier.
  • MCID: DPCstruct metacluster identifier.
  • DPC Target: Target DPCstruct protein domain.
  • Q./T.Range: Amino acid coordinate ranges for query and target.
  • Q./T.Cov: Coverage metrics indicating how much of each domain was covered in the alignment.
  • A.TM-Score: Template Modeling score of the structural alignment (0-1).
  • lDDT: Local Distance Difference Test score.
  • pIdent: Percent sequence identity between query and target.